Step 1: Activate QuickBooks Online Payroll A qualified QuickBooks ProAdvisor can provide QuickBooks Online training if you need more assistance than is provided in this guide. Printing pay stubs in QuickBooks Online is a fairly simple process, and once you have chosen your settings, you will be able to print pay stubs in minutes in the future. How to Print Pay Stubs in QuickBooks Online: Step by Step Open Paycheck List and select the employees for whom you want to print pay stubs. Select 'plain paper stubs' or the 1- or 2-stub check stock option in Payroll Settings. Whether you need to print pay stubs for your employees as a matter of course or an employee has requested their most recent pay stubs to secure a loan or social security benefits, the steps are the same: Learning how to print pay stubs in QuickBooks Online is an important part of doing your own small business bookkeeping.